Optimizing Risk Assessment Through cfDNA in Pancreatic Neuroendocrine Tumors for Clinical Evaluation

NCT07817225 — Active not recruiting, 30 participants, Massimo Falconi

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Optimizing Risk Assessment Through cfDNA in Pancreatic Neuroendocrine Tumors for Clinical Evaluation: a Retrospective Study

RegistryNCT07817225, acronym ORACLE
StatusActive not recruiting
Study typeObservational
Enrollment30 (Actual)
SponsorMassimo Falconi (Other)
ConditionsPancreatic Neuroendocrine Tumor
InterventionscfDNA molecular profiling (Other)
Datesstart 2026-09-12, primary completion 2027-09-12 (estimated), completion 2027-12-12 (estimated), first posted 2026-09-14, last updated 2026-09-16
Locations1 site in Italy

Related Papers Related Patents Related Grants Related Experts
All trials for Pancreatic Neuroendocrine Tumor All trials of cfDNA molecular profiling

-Summary

Non-functioning pancreatic neuroendocrine tumors (NF-PanNETs) are heterogeneous neoplasms of the pancreatic endocrine tissue, displaying variable clinical behavior from indolent to highly aggressive forms. Their often asymptomatic nature and lack of reliable preoperative biomarkers make clinical management particularly challenging.

This exploratory study will investigate cell-free DNA (cfDNA) as a potential non-invasive biomarker in NF-PanNETs. cfDNA samples from approximately 30 patients, representing distinct clinical courses (active surveillance, indolent post-surgical, and aggressive post-surgical cases), will be analyzed using advanced methylome and nucleosome footprinting techniques.

The aim is to evaluate cfDNA's diagnostic and prognostic potential to improve disease monitoring and support personalized therapeutic strategies in NF-PanNET patients.

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+Detailed description

Pancreatic neuroendocrine tumors (PanNETs) are rare, heterogeneous neoplasms arising from the endocrine tissue of the pancreas. Non-functioning pancreatic neuroendocrine tumors (NF- PanNETs) have traditionally been considered rare; however, their reported incidence has significantly increased over the past two decades. Current estimates suggest that approximately 1-5% of the general population may harbor undiagnosed NF-PanNETs. Given this prevalence, there is an increasing need for reliable diagnostic tools to distinguish high-risk, aggressive tumors from benign, indolent lesions.

NF-PanNETs exhibit a wide spectrum of biological behavior, ranging from slow-growing, indolent tumors to highly aggressive variants prone to local invasion and distant metastases. However, due to their frequent asymptomatic presentation and the absence of reliable preoperative markers for tumor aggressiveness, clinical management remains challenging. Current diagnostic methods rely on imaging and invasive biopsies. However, this approach has limitations in detecting early-stage disease and assessing tumor dynamics. Indeed, it often leads to overtreatment in low-risk patients through unnecessary surgical interventions, while potentially undertreating those who might benefit from more aggressive therapeutic strategies, such as neoadjuvant therapy.

In recent years, cell-free DNA (cfDNA) has emerged as a promising non-invasive biomarker in the oncology setting, proving to be extremely useful for diagnosis, prognosis and therapeutic purposes.

In the specific context of PanNETs, there is limited research on the value of cfDNA. Despite showing encouraging results, the few existing investigations on this subject, have included only small and heterogeneous cohorts, varying primary tumor sites, stages and differentiation status.

This exploratory study will analyze cfDNA profiles from approximately 30 NF-PanNET patients (10 under active surveillance, 10 with indolent tumors post-surgery, and 10 with aggressive tumors post-surgery) using advanced methylome and nucleosome footprinting technologies. Analyses in the three patient subgroups will be compared with data from a previously characterized cohort of healthy subjects.

The goal is to assess cfDNA's diagnostic and prognostic utility, potentially offering a non-invasive tool for better disease management, monitoring and personalized patient care.

+Arms and interventions

ArmTypeInterventionsDescription
histological indolent PanNETOther: cfDNA molecular profilingpatients submitted to surgical resection for pancreatic neuroendocrine tumor (PanNET) with histopathological diagnosis of indolent disease
histological aggressive PanNETOther: cfDNA molecular profilingpatients submitted to surgical resection for pancreatic neuroendocrine tumor (PanNET) with histopathological diagnosis of aggressive disease
PanNET under active surveillanceOther: cfDNA molecular profilingpatients currently under active surveillance for small indolent pancreatic neuroendocrine tumor (PanNET)
  • cfDNA molecular profiling (Other): Circulating-free DNA (cfDNA) will be extracted from plasma samples previously collected and currently stored at the San Raffaele Hospital (HSR) NETBank biobank. cfDNA profiling will be performed using methylome and nucleosome footprinting techniques. No therapeutic or experimental intervention will be performed.

+Outcome measures

Primary outcomes

  • cfDNA Molecular Profiling [From enrollment until the day before surgery, or during scheduled visits for patients under active surveillance.]: To investigate the feasability of circulating-free DNA (cfDNA) assessment as a non- invasive biomarker for non-functioning pancreatic neuroendocrine tumors (NF-PanNETs). cfDNA concentrations and cfDNA epigenetic and fragmentomic signatures in plasma samples will be analysed.

Secondary outcomes

  • Predictive Value of cfDNA for Tumor Aggressiveness [From enrollment until the day before surgery, or during scheduled visits for patients under active surveillance.]: To correlate circulating-free DNA (cfDNA) levels with tumor aggressiveness and clinical outcomes, and to identify tissue-of-origin insights using cfDNA methylation and nucleosomal footprints.

+Eligibility

Sex: All, ages: 18 Years to any

Inclusion Criteria:

* Age ≥18 years.
* Diagnosis of sporadic, well-differentiated, non-functioning pancreatic neuroendocrine tumor (NF-PanNET).
* Signed informed consent for the use of plasma samples stored in the "NETbank" biobank.
* Availability of pre-operative or surveillance plasma samples.

Exclusion Criteria:

* Genetic syndromes associated with NF-PanNETs (e.g., MEN1, VHL).
* Functioning PanNETs.
* Inadequate quality or quantity of circulating-free DNA (cfDNA) extracted from plasma samples.

+Locations (1)

FacilityCityCountryStatus
IRCCS San RaffaeleMilan, MIItaly

+Publications

  • Loyfer N, Magenheim J, Peretz A, Cann G, Bredno J, Klochendler A, Fox-Fisher I, Shabi-Porat S, Hecht M, Pelet T, Moss J, Drawshy Z, Amini H, Moradi P, Nagaraju S, Bauman D, Shveiky D, Porat S, Dior U, Rivkin G, Or O, Hirshoren N, Carmon E, Pikarsky A, Khalaileh A, Zamir G, Grinbaum R, Abu Gazala M, Mizrahi I, Shussman N, Korach A, Wald O, Izhar U, Erez E, Yutkin V, Samet Y, Rotnemer Golinkin D, Spalding KL, Druid H, Arner P, Shapiro AMJ, Grompe M, Aravanis A, Venn O, Jamshidi A, Shemer R, Dor Y, Glaser B, Kaplan T. A DNA methylation atlas of normal human cell types. Nature. 2023 Jan;613(7943):355-364. doi: 10.1038/s41586-022-05580-6. Epub 2023 Jan 4. PMID 36599988
  • Vaisvila R, Ponnaluri VKC, Sun Z, Langhorst BW, Saleh L, Guan S, Dai N, Campbell MA, Sexton BS, Marks K, Samaranayake M, Samuelson JC, Church HE, Tamanaha E, Correa IR Jr, Pradhan S, Dimalanta ET, Evans TC Jr, Williams L, Davis TB. Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA. Genome Res. 2021 Jul;31(7):1280-1289. doi: 10.1101/gr.266551.120. Epub 2021 Jun 17. PMID 34140313
  • Cowzer D, Shah RH, Chou JF, Kundra R, Punn S, Fiedler L, DeMore A, Capanu M, Berger MF, Reidy-Lagunes D, Raj N. Clinical utility of plasma cell-free DNA in pancreatic neuroendocrine neoplasms. Endocr Relat Cancer. 2024 Mar 4;31(4):e230292. doi: 10.1530/ERC-23-0292. Print 2024 Apr 1. PMID 38252063
  • Oversoe SK, Sorensen BS, Tabaksblat EM, Gronbaek H, Kelsen J. Cell-Free DNA and Clinical Characteristics in Patients with Small Intestinal or Pancreatic Neuroendocrine Tumors. Neuroendocrinology. 2022;112(1):43-50. doi: 10.1159/000514457. Epub 2021 Jan 18. PMID 33461190
  • Boons G, Vandamme T, Peeters M, Beyens M, Driessen A, Janssens K, Zwaenepoel K, Roeyen G, Van Camp G, Op de Beeck K. Cell-Free DNA From Metastatic Pancreatic Neuroendocrine Tumor Patients Contains Tumor-Specific Mutations and Copy Number Variations. Front Oncol. 2018 Nov 1;8:467. doi: 10.3389/fonc.2018.00467. eCollection 2018. PMID 30443491
  • Partelli S, Battistella A, Andreasi V, Muffatti F, Tamburrino D, Pecorelli N, Crippa S, Balzano G, Falconi M. Critical appraisal of the adequacy of surgical indications for non-functioning pancreatic neuroendocrine tumours. BJS Open. 2024 Jul 2;8(4):zrae083. doi: 10.1093/bjsopen/zrae083. PMID 39107074
  • Partelli S, Giannone F, Schiavo Lena M, Muffatti F, Andreasi V, Crippa S, Tamburrino D, Zamboni G, Rubini C, Doglioni C, Falconi M. Is the Real Prevalence of Pancreatic Neuroendocrine Tumors Underestimated? A Retrospective Study on a Large Series of Pancreatic Specimens. Neuroendocrinology. 2019;109(2):165-170. doi: 10.1159/000499606. Epub 2019 May 22. PMID 31117106
  • Dasari A, Shen C, Halperin D, Zhao B, Zhou S, Xu Y, Shih T, Yao JC. Trends in the Incidence, Prevalence, and Survival Outcomes in Patients With Neuroendocrine Tumors in the United States. JAMA Oncol. 2017 Oct 1;3(10):1335-1342. doi: 10.1001/jamaoncol.2017.0589. PMID 28448665

+Investigators